NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1002835

Scaffold Ga0114347_1002835


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1002835 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15781
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (62.22%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F000808Metagenome / Metatranscriptome882Y
F001507Metagenome / Metatranscriptome681Y
F003393Metagenome / Metatranscriptome489Y
F003965Metagenome / Metatranscriptome459Y
F005348Metagenome / Metatranscriptome403Y
F011077Metagenome / Metatranscriptome295Y
F018352Metagenome / Metatranscriptome235Y
F084151Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_100283513F001507AGGAMSDLIHKPYTIDELVTEIYEDNFSHFDFMENMNGGQCDCNLHITLDTIMQYWGN*
Ga0114347_100283519F000684AGGMTLGGYTYQLGDLFTTSKTGITGRIVKFSPISSKLTRVSLQLANGQRRLAMVATTK*
Ga0114347_100283524F003393N/AMRNKMKTVEKDDIIPIMDYVKVDVLTAGQLEVDDLILVDGEVVSIVEIISLPDGYTIEIINDFGEREVIEVEEYQQFDLMMLQ*
Ga0114347_100283526F000808AGGAGMEYTYSLTTSYDGELVNTLRVSDMLEAVSAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVVIR*
Ga0114347_100283527F018352AGGAMAKVKEMLSTILTCSYCYGQGWQFVGNDVDFDVWACECNPYNIPADEVMAYHELFKTKENA*
Ga0114347_100283529F005348AGGMINSVMAFDCDECNGQGLIFWGNDLDYDVEQCDCNDFALGNLFTTKEAE*
Ga0114347_100283535F003965N/AMLGLFHKVKKERWSKMTTLVINEVCKVHTPNKSAISEVGDDQFTFCEVCEQNIERWYNDTDPERLPMWTSWKVSN*
Ga0114347_100283537F084151AGTAGGMTITYAIWQGSNLLSINNIATNIKDVDKIIKELNDSDVANKVKFSANIQKVEVSK*
Ga0114347_100283540F011077N/AMIINDNLTWADEAEGVWKGWTYSRSRNRYFFDDVGNESIAELWNDPFLNQAFESEGEK*

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