NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1003283

Scaffold Ga0114347_1003283


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1003283 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9673
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F002935Metagenome519Y
F063705Metagenome / Metatranscriptome129Y
F085262Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_100328315F002935AGGAMSERVKGYVGQIVDGKKLATIANDIYKAQYNDFSACTVDNLLFITLEETNAFGDHKYALVCSEGVGWEQDTFGCLEVPTNIGQMGLWNGRVFISVEKVKECLTDETEDISDYIRTFGYRLDSNCSLWQSKMSEVGSTILA*
Ga0114347_100328321F085262AGGAGGMNNLYSILSERYPEGDFNEMDLWEAIADSEGLELYEIMDGDLTEYL*
Ga0114347_10032836F063705GGAMTNQLIEYMKLHLISLRQDWDDAINNIELIDSEYHPSDDYFEGAIEATEHLLSVATDILSTNERNTNG*
Ga0114347_10032839F000450GGCGGMGDRANFGFVQPNGNTIVLYGHWAGYNMLANLAEAVVKAQGRWSDPSYATRIAISHMIGEGWAMETGWGLHVNEIGDNEHKIAIVDFQQQTFSLHEEDSYHNESNKVRGMSNEAIFTQDLSAFCEKYSDSLIKV*
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