NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1018838

Scaffold Ga0114347_1018838


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1018838 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3290
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F000868Metagenome / Metatranscriptome853Y
F018349Metagenome / Metatranscriptome235Y
F083783Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_10188383F018349AGGAGGMDYKDGFEDGVKFTREVIVANIRAWAVDCIDGSEGQIMDDIADRIEFGTLDNDL*
Ga0114347_10188385F000450AGGAMGDRANFGFVQPNGNTIVLYGHWAGYNMLGRLADAVIEARARWNDPSYATRIAISQIVGDQWNEETGWGLHVNEIGDNEHKVAIVDWAQQTFSLHNEDSFHNTDNKVRGMSNGAIFTMDLSEFCEKYAINKLLTV*
Ga0114347_10188387F000868AGGAMQHGAFDDENEMVMGAIMSDIADQLLDDWVQSNLDEGQLYSDYQIASRCDSNYLKGRFNQFYDLKPEDQYYVEVNE*
Ga0114347_10188388F083783GGAGGMESEYINRKEQLTTYLLLHAQSLNQDLDMISNRMELLDPASKEFAELDIEYNFTSGQESATMHILQYVEEIM*
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