NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1035085

Scaffold Ga0114347_1035085


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1035085 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2239
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F007470Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_10350854F000311GGAMYFELTAPDRLSMEMAYWDAQMIGLDPQAMSPLTFNIGTGSIEKVSRIRDKHNLTESYTSDYEPTGYTRR*
Ga0114347_10350855F007470AGGAGMDYQDGFEDGVKFAREVIINNIRLWAETSDDGQVLDDVADRLEFGKVDYDL*
Ga0114347_10350857F000450AGGCGGMGDRANFGFVQPNGNTVVLYGHWAGHQMLGRLADAVIAARPRWNDSSYATRIAISQLVADQWNMETGWGIYVNEIGDNEHKIAIIDWDQQTFSLHEEAPRNDLDNKVNGMNNKALFTQDLSAFCEKYALDQILTV*
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