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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008114 Open in IMG/M |
| Scaffold ID | Ga0114347_1074472 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3313 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000545 | Metagenome / Metatranscriptome | 1038 | Y |
| F005585 | Metagenome / Metatranscriptome | 395 | Y |
| F013317 | Metagenome / Metatranscriptome | 272 | Y |
| F014613 | Metagenome / Metatranscriptome | 261 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114347_10744721 | F013317 | N/A | TLMIEKKKWDYLADIRARTGSKTLYINATPKGVYQFDLGAITEPEWALKRLPITTDFANKATNERLAGFLDIRHAELLLV* |
| Ga0114347_10744723 | F014613 | AGAAG | MFPNLSDEAVVGIIIGGPFIGLYIWSLFTSAKAKAFNEGYKRGRSSVRYTEIVK* |
| Ga0114347_10744724 | F005585 | N/A | MNGLKKLETHYSTGASSMATRGTIYYAFSKSVKHSVFSSETHLTWQLLLSRPSSQEWWRVQSAKIRISISLDMPLSWVDYDFLHQKIGTTLSLTRNHNSNQYCDLCKYRWGQNKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADDVQNWPDGTFYSLKEQLQDAINDFAGREKLDVELP* |
| Ga0114347_10744726 | F000545 | N/A | MDAYWFRWALGLSEMRSDAHPFICSNCKLVTPHIELTKYETSDVKDAPEEVWLVECQRCFLQRIIYPSDRVASKEDDIVRCDQCGGWKMKAAKCRICRLAAGLESISERYWTGGETLERPYNASL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |