Scaffold Ga0114350

Basic Information
Taxon OID	3300008116 Open in IMG/M
Scaffold ID	Ga0114350_1000066 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58460
Total Scaffold Genes	97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (38.14%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

58460

Total Scaffold Genes

97 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (38.14%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009329	Metagenome / Metatranscriptome	319	Y
F013631	Metagenome / Metatranscriptome	269	Y
F015080	Metagenome / Metatranscriptome	257	Y
F022640	Metagenome / Metatranscriptome	213	Y
F027828	Metagenome / Metatranscriptome	193	Y
F031454	Metagenome / Metatranscriptome	182	Y
F034907	Metagenome / Metatranscriptome	173	Y
F037191	Metagenome / Metatranscriptome	168	Y
F048940	Metagenome / Metatranscriptome	147	Y
F082582	Metagenome / Metatranscriptome	113	Y
F091925	Metagenome / Metatranscriptome	107	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100006617	F009329	AGGAG	MTPYELRFEVFKQAYAMMNDQFSIEYDTARVWNDNSENTVKIDYPEFPTLDKVLEQAQIINDFVSSK*
Ga0114350_100006635	F013631	AGGAG	MIVSEVFHYTTSRWDWHDCNVNQMWIEEIEESPDCYRYIAVAYNPRKDASMVMSEPRCYADTLNWVRIWCNSFCILPEFSVAV*
Ga0114350_100006641	F027828	N/A	MLDKVLMVEELLNEKQLNALRDILYFYKEFENELYNYPPEDTLFTKTQFEIFDIFDIK*
Ga0114350_100006643	F091925	N/A	MTSISFTSGELLDIISALEEKENLAYLVDYDPGLAAYYMNLGNQFQRIYDKLQDFVPENRVANLVLAVN*
Ga0114350_100006648	F101038	N/A	MELTNSFPPADAMVKKIQEFNYVKFGDNVVKYSITACAIVVAVSSYLWTAFQLWWDDNGEATQVNLIRFVVNVIDFIAAIVIATPKVYRWVKLNSNRLVDSLFFQYTFA*
Ga0114350_100006652	F034907	GAG	MITLVIGGVIVSAFLILFYLEDKDGGGLYDPDPSASYRHKKSNK*
Ga0114350_100006653	F022640	N/A	MRIAFLIATLALGLRFGLVAHATTNEYQEQQAEMFCQANSNYCK*
Ga0114350_100006657	F082582	AGG	VEGVRPTYKRPTNLITMTVDFSKDVMLGMLRKGATGTQLLDILNTLVPDQTELTREYVCDQLGIADCPENDDEIAAYMAAV*
Ga0114350_100006660	F037191	N/A	MTVAEFIEKLKEFPLDQEVRITDEYRYNFYQGDFEFQLFEEVNGSTFVDIGVGGFDEFDDD*
Ga0114350_100006665	F015080	N/A	MFDQLIFEAHPIPGAIQARYKFSNDWSISVVSGLPGSGLYGNVTDNTYEVAIFRPNGNMTEDVIGWNTKAEVSAMMRVLVQL*
Ga0114350_100006668	F048940	N/A	MEKKFFINFIQLVNEVQSAKTQLPSQAKSYKKSAWVKQISNPKQKADALSRV*
Ga0114350_100006675	F031454	N/A	MNDSTLDLFCQHEDENYADEYAMEIERKCAELEITVDYYLMEFI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114350_1000066

Overview

Ecosystem & Geography

Associated Families

Sequences