Scaffold Ga0114350

Basic Information
Taxon OID	3300008116 Open in IMG/M
Scaffold ID	Ga0114350_1003308 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10279
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (78.57%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

10279

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (78.57%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F005558	Metagenome	396	Y
F013279	Metagenome / Metatranscriptome	272	Y
F015702	Metagenome	252	Y
F016642	Metagenome	245	N
F017972	Metagenome	237	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100330812	F003784	GGAGG	MYDDDRERVGHNVTDFAAYGLSHLAPGQDEPDNTDTPTANPLVDHAAVTGYRAMGVSTEDLTSFIESFASLRAMRVKGVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD*
Ga0114350_100330814	F013279	AGGAG	MMYDYRCPDCNTELTIERSIHEQPREPSCFECHIPMIRKWDSPSITFKGKGFYSTDK*
Ga0114350_100330815	F017972	GGAGG	VRTRHLSLVTQRHSVTTTTKSNVSSPYGPVNPASTTWLAQETLRANQEARLLELLNSLENVVDSLNYKSFTAYDTLVIATEGVRVALSAIVTDEAGTDTL*
Ga0114350_100330816	F055450	GGAGG	METENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTIPVVGVRVRTAEGRGAPVLKEDIHKGTNEGNDGGEA*
Ga0114350_100330817	F068766	AGGAGG	VSEDNVVGFHPKNKLVNFYEIATAEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGVQ*
Ga0114350_100330818	F015702	AGGAGG	MTIKEVELEYTVYNLVQLARKVWGDNADEYLAARLDSVITYNQMKVLIDSLKEESK*
Ga0114350_100330819	F023834	GGAGG	MSEPTVDYWKAKAQLCRDLALIQIEDEETEKEAGMNLMRMVHALSMVDTFNEGGSDDN*
Ga0114350_100330821	F026864	AGGAGG	MSEQDKTAQFVFTVVIVPDNKRYEVELWDFAGDEPALIAAGEGSNWRTALGEALSKIELPTDKVEKTINDVIKEGVEDEGV*
Ga0114350_100330822	F005558	AGGAGG	MTTDQDSMSWAELAQLTHATQVERFNWCMCEDNEGQENPYNDCPKEAE*
Ga0114350_10033089	F016642	GAGG	MIVRLSRDEVRVCTLLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNELHPRRAKLPDVGVNFEVRTVRTRDSIPFWSKDSGKIIVGTKILDEDYYSQVEVYGWCNPEEYATMQYRDEAIGGWRVPVTELKEF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114350_1003308

Overview

Ecosystem & Geography

Associated Families

Sequences