NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114350_1005686

Scaffold Ga0114350_1005686


Overview

Basic Information
Taxon OID3300008116 Open in IMG/M
Scaffold IDGa0114350_1005686 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7678
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005092Metagenome / Metatranscriptome412Y
F013526Metagenome / Metatranscriptome270Y
F026861Metagenome / Metatranscriptome196Y
F029721Metagenome / Metatranscriptome187Y
F040535Metagenome / Metatranscriptome161Y
F049499Metagenome146Y
F058095Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0114350_100568611F005092AGGAMDKLEYALKVIADCDLCGGIGTQYWSNGEDYDFEDCVCNPYGLILDDGDVIWDNGLSSQDELAIFGSKEAN*
Ga0114350_100568613F058095GAGGMEYNYVLTTSYDGELVATNRISDFMEAHEAWAKCKDHGNAKEYATYNLTDLTGKMYTKNFYANGSVSVK*
Ga0114350_100568614F049499N/AMTDTIIAMDYRLVDVLNADQLEVGDLIGLNEEVVKLIEIAPAKFGYVVTYENEFGEKEITDITDDEQFELFILDL*
Ga0114350_10056863F040535AGGAMLSLSYTVEKEGNLVTIQDRLMLSEYQINNLMDTLVSHGYDVLSMEVK*
Ga0114350_10056865F013526AGGAMKKNVLISFVTEADTDFQAISELRKVMYSLPESTVEKFEAFEILDVE*
Ga0114350_10056867F029721AGGMKTYSIEDLLVGQTYHPRSLARRFQGGEITFAEKREDIYLVGYEAYAIRYRVGQSIKQDWATVAVKVEE*
Ga0114350_10056868F026861GAGGMKLDEFKKLIEAQRQEVKLTNLEKIAKIVDTTNTKKGNN*
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