NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114350_1005953

Scaffold Ga0114350_1005953


Overview

Basic Information
Taxon OID3300008116 Open in IMG/M
Scaffold IDGa0114350_1005953 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5925
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002301Metagenome / Metatranscriptome573Y
F012001Metagenome / Metatranscriptome284Y
F023330Metagenome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0114350_10059532F012001AGGAGMFDKEKAKQIALSYLRAAAASAVALYTAGQHDPKVLATAFLAGLVGPILKALDKSAPQFGLKK*
Ga0114350_10059537F023330N/AMVNEESKDIRDLIHHGDYSRSMDLRGESIGDVCLCGSEIFIALVAFENKEISFYFLDGECASCGSMVTLPYPENTENG*
Ga0114350_10059538F002301N/AMESAFTEEYESVVASIATEYQKKYPMVEQQDIRQTLWMWFVTHPAKYKEWSVLEQKDKDKLIAKSLRHAAIKYCEQEKARTVGYELLDLYYYDVSVVEAFLPSIISESYEIPTKIKDIGSQVKSNEINDGNNWLVLRSDIASAFYKLTEAKQNILRTRYSTELSEWSDIAKDLDTTADGARMKVKRALASLVRNLGGFRPKVEPDEPQERTDNGE*
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