NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114350_1008322

Scaffold Ga0114350_1008322


Overview

Basic Information
Taxon OID3300008116 Open in IMG/M
Scaffold IDGa0114350_1008322 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7019
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012105Metagenome283N
F031455Metagenome / Metatranscriptome182Y
F041721Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0114350_10083222F012105GGAGGMIPLAIRRHNLQDLTLGQSTLLTVASCEERQIRRAMGAVNAERSDGLRLKTLRTPDGLRVWLVECVEVADCPEWKTGKSRRFPGRDPVAVQKSVVKLNEWARVLRRPYRFRVVVRGGVPIVLKLPKNKTIRIRREAELSRVMRAVERLRAGQGTVVRGVERCDIVRAKWRMKKRGIRFIVRNIGESVWNVERVTE*
Ga0114350_10083223F041721N/AMRAWIHYDRGCGMSEQQLESLRAFAARERGHLLEHCPPIPVVSDWFLEVDRDGRITGQVISGACTSHVQYDPRFRAVFRHDCTFYSSGLGEWLHVVETFWRQTLRQWQSYRRLGEVLQAAEDCTPETHEERWRAVYECLGWNPDTAREQYLERRAGR*
Ga0114350_10083225F031455N/ALAVGSSVLLKIPREQFTPLRRVIAFFNECTDDGTALRTKIGPDGITVSRREIVRIADSPDWRVGTSKPFACADRVSLEHAVARANEAAKQLGRGYRFRVVVEGGKSSVLKTLCRCRCVIHRQEQYLRIVGMIRRMGVDCVCKVSDVELRDVRRVQRNFKHSLRFRAKQVGDNTFQIRRTR
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