NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114350_1011531

Scaffold Ga0114350_1011531


Overview

Basic Information
Taxon OID3300008116 Open in IMG/M
Scaffold IDGa0114350_1011531 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6577
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F040629Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0114350_101153110F002060N/AMQIDYITVTLTLLAAILSGFATAIIAGIRDAKKERVRREERDKDHLKMEVKDLKIDLYKLEKELTEWKDKYYEAIQELITLKAELENALTMLNHIEFHEDLDSEYLK*
Ga0114350_101153111F000671GAGGMEKILCYSCNKSKNKLNVRRSSLLPINLFLCQTCIDQKMEPRWVVLISGRQNGHEHVKEFVQKKRYIGSEITAAELLI*
Ga0114350_101153114F000473N/AMPSNLYDNKHFKHGVNLWTGEPNKPVFYNEEMKKKLREIKKPLLLMMDVVKYPEFLALRLYEDNFIQFTGSKKEEVIDYVTKVKKMIESYGVRCELEGVPGGRSIT*
Ga0114350_101153118F040629N/AMNKFSVKLEILAEVEAFDEDDARDYINDIFGTDDEVKSIKIISLAKK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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