Scaffold Ga0114350

Basic Information
Taxon OID	3300008116 Open in IMG/M
Scaffold ID	Ga0114350_1011819 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9527
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (88.89%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

9527

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (88.89%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F002071	Metagenome / Metatranscriptome	596	Y
F005177	Metagenome / Metatranscriptome	409	Y
F007470	Metagenome / Metatranscriptome	350	Y
F038643	Metagenome / Metatranscriptome	165	Y
F078406	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10118191	F000868	GGAG	MAESFLENENQMVIDAIYHEIGEQLVEDWVQSNLDEGQMYADYRFAEMSNDNYIKGRFNQFYDLKPEDQ
Ga0114350_101181914	F005177	AGGA	MKNRYRIEIYDDVKANDLTIYSETKIDKDHLTEIVFSNLRRFSGNVRAFVFDNLKKKKTTALYLPMEVIPKKTELTKLLG*
Ga0114350_101181917	F002071	AGGA	MATTLEIGQTFTTEKSGVVGVIKAVDNHPSGVARILLDVNGSERWTSVSI*
Ga0114350_101181919	F078406	AGGA	MLSTATALIQATEDSIFDEEVMGFAQAFCQHAPQLDEQQFAKSIYVYSCMLASLAVDKAMKVLLSEDEIINLMNAIDELETMRDEVMNNGE*
Ga0114350_101181920	F038643	AGGA	MSDFANWKSYPFTVEGVEFVSLIDPNGSMYSQIKRVPSQVFSQMNEQAIREIIGSISNLTKSEIQAELDKINLGYSQAYLALA*
Ga0114350_10118193	F000450	GAGG	VGDRANFGFVQPNGNTIVLYGHWAGHQMLGRLADAVIAARPRWSDPAYATRIAISQIIGNDWNSETGWGLHVNEISDNEHKIAIVDWDQQTFSLHEQDDYRNTDNKIRGMSNTAIFTMDLSTFCEKYALEGMLVN*
Ga0114350_10118195	F007470	AGGAG	MDYQDGFEDGVKFAREVIIANIRLWAESSDEGQVMDDVADRIEFGTVDYDL*
Ga0114350_10118196	F000311	GGA	MYFELTAPNQIALQRAFWSAEMMGLDPLLIAPLTFNIGTGSIEKVSSIRDTYNLKETYVSDYEPTGYTRR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114350_1011819

Overview

Ecosystem & Geography

Associated Families

Sequences