Scaffold Ga0114350

Basic Information
Taxon OID	3300008116 Open in IMG/M
Scaffold ID	Ga0114350_1014064 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3468
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3468

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005054	Metagenome / Metatranscriptome	413	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10140642	F000258	GGAGG	MVYTANYKLDAMLELRKYLWKELYTREIFNEEDYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKIGLSYEDNWLICCEQIMFTLYSTSVAEINEIRNYMTDEFRRMDESARDINKWTGLSNKFKFHSIWVADISPTAPSEELQGFFSAEVILEVKYSRITDEVGRFL*
Ga0114350_10140643	F001900	GGAG	LDNSGLLVQAASGLERMMYANQNGPLKDSTVAQISAFVYYEAAVISKLTTNAQFKALFTKTMFDQINTDFGNYIDALARSKPKSLHHVYEWKRAGNKTARLFKLNKISEDGLSFRINYEFLPSRSMVPAPSGRRRHMFVNKASVMEEGKPLVIRPKNAERLVFEIDGETIFMPKGQSVTVRRPGGSASTNQFTLTHSRFFSGNLINASIKNSGFQRIFNSSITKALRVPNNIKKVQYSFSANAIRSQADAALVASFGGAM*
Ga0114350_10140644	F001229	GAG	MNSIVDSVLSMNLDVYRQSEIQDPNTGAIIREWNYYKTVPCHVKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTAEKLTAREKVTNIRDSEGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ*
Ga0114350_10140645	F005054	N/A	MAEILINSQSPITHKDFWNGDVASADALPTVGVYDVTNDPTISPAISPTTLLTTLTSSLDENNPGTYSVNIPYQYADRNKTLRLKWNYTVGGTVVKKEDEVYVITPYVDFNHAQDMGFSTDSSDPGYKSYKELLASEKYARKQIEQYTGQKFYLYDDVYMVYGYDSDILPLPARIAELYYLYSNDILLLDNIEEINNWNYNVILSESGYGIRINRASMLDNTVYTANGMVPPSIHDYSGVFQSGVPYKVYGRFGWEKVPDNVELAAIELMKDYFSKDTMWRNKYVKNISTFDWDFEYTGDAYTGTGNAYADNLLADYVLTTKVEII*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114350_1014064

Overview

Ecosystem & Geography

Associated Families

Sequences