NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114350_1041442

Scaffold Ga0114350_1041442


Overview

Basic Information
Taxon OID3300008116 Open in IMG/M
Scaffold IDGa0114350_1041442 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1740
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012105Metagenome283N
F019635Metagenome / Metatranscriptome228Y
F022865Metagenome / Metatranscriptome212Y
F041721Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0114350_10414421F012105GGAGGMIPLAIRRHNLQDLTLGQSTLLTVPSCEERQIRRAIGVVNAERTDGMRLKTLRTPDGLRVWLVECVEVADSTEWKTGKSKRFPGRDPVAVQKAVVKLNEWARVLRRPYRFRVIVRDSVPVVLKLPKNKTIRIRREAELSRVMRAVERLRAGQGTVVRGVERCDIVRAKWRMKKRGIRFIV
Ga0114350_10414422F041721AGGMSDSQLESLRAFAARERGHLLEHCPPIPVVSDWFLEVDRNGRITGEVISGACTTHVQYDPRFRAVFRHDCTFYDCGLGEWLHVVETFWRQTLRQWQAYRRLGEVLQAAEDCTPETHEQAWRAVYECLGWNPDTAREHYLERRAGK*
Ga0114350_10414424F019635GGCGGMPTIKIYIDGDTEQPTPTPTPEPPADLQAEIDRINAALCDVLTRIAKIEGDVRGVRMRLIEDNAEGQVP*
Ga0114350_10414425F022865GAGGMKGRPMKKSKQTEKKPMGRPRKHSVQAITCVVKLPPEVVRWIDARYTTRQEGLATIVANAAGVQ*
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