NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114350_1120694

Scaffold Ga0114350_1120694


Overview

Basic Information
Taxon OID3300008116 Open in IMG/M
Scaffold IDGa0114350_1120694 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)789
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057900Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0114350_11206941F057900N/APYSAKKLESMGQNWRSNRPTGFLSTMVSRIQPPFKQVIEQAPTLTYTKFPVEGVDSENKTKVFREEITKCIRGWKGHDDIVAQVVHENTTFGFCALCWDDLRDWKPEFLRQDYTFFSIETPQETEATPIWARKRRYQIAELLPVLEDPQMSAMAGWHIKNLVKAINNAIPAGRTLDADDDARRYEDWIREGSYGASYENDAKYVELGELLVREPNGKISRVLFDDKSGDEICTQIDRYSKMSECLALFSVEIGSGALMSSRGA
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