Basic Information | |
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Taxon OID | 3300008117 Open in IMG/M |
Scaffold ID | Ga0114351_1002635 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15146 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (30.30%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001806 | Metagenome / Metatranscriptome | 631 | Y |
F051883 | Metagenome / Metatranscriptome | 143 | Y |
F055681 | Metagenome / Metatranscriptome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114351_100263510 | F051883 | N/A | MSYADLQSITLVGRIADLRTFQTEDDRECLAVTLYHRISQDATITVKFLNSNGLLTAYNNSNLVVGQELTVTGKLQAIRAFYMKDDALTPLKQPEFQLRVNDYAFGSKPQPKVQDTEPAVTSTKKAKAKPTLEPVEF* |
Ga0114351_100263524 | F055681 | GGA | MIGINIEFKRWYLVIRGPKGRVYSAFGFAKQMPVFLPTHTTTLDQYLADRDDEIVFTNSKGEELLRL* |
Ga0114351_10026354 | F001806 | N/A | MDAGIRQKRVEALETIKDKALGLAKEGRDSLEVRDFVTSAKKELAYELPDEESFKKAMNATLAYKRTKGE* |
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