Scaffold Ga0114351_1003845

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114351_1003845

Scaffold Ga0114351_1003845

Overview

Basic Information
Taxon OID	3300008117 Open in IMG/M
Scaffold ID	Ga0114351_1003845 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13358
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	5.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012965	Metagenome / Metatranscriptome	275	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_100384514	F012965	AGGGGG	MSIATVIQNVADEAGYTVESNIFTSTETTTKQLLAIAQRINRDIFEAYPWPKCYASGSITLVAGQATYALPAAFSHYQYDTFWNQSTRWRVIGPISEQDWAQIQGYGLMPTIYQRFQIRGMSNNELLINPTPTAANAGQILIFEYIADRSVKPVNWTASTPFAANAYCFNNGNYYQTTAGGTTGATAPTHTSGSVSDGGVTWAYYNGPYSSFLANTDTSIFNDKLVEQGILERFAQIHGLEGVRPLFDQQLHEEFSRTKAGQVIYAAGEYRPLQFARSGVAAFGTWI*

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