Scaffold Ga0114354_1029765

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114354_1029765

Scaffold Ga0114354_1029765

Overview

Basic Information
Taxon OID	3300008119 Open in IMG/M
Scaffold ID	Ga0114354_1029765 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3782
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)		Depth (m)	7.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009514	Metagenome	316	N
F048999	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_102976510	F048999	AGG	MITITLHQKTDNDGWQTIKSLPIDSAQWGKIDRSWISTLIESGSMVITIGHTMYSIDKN*
Ga0114354_102976511	F009514	AGG	MTKQQILALQSIGKGIIEAANIDSIGAPSGVIYSALMSHGATLNQFQQIMSTLERHGFLTHDVDANTYHATNAGLQWANKV*

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