NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114354_1063768

Scaffold Ga0114354_1063768


Overview

Basic Information
Taxon OID3300008119 Open in IMG/M
Scaffold IDGa0114354_1063768 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2717
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)7.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077288Metagenome117Y
F078705Metagenome116N
F093349Metagenome106N
F093847Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0114354_10637682F093847N/ALTINLRKTFARVVYFIEQTNQGKSKEIILKELDLSEDEFQFLLNTMLSFSALKDNEATISSLDISGTVYIGGTYVTINNKDVISL*
Ga0114354_10637683F078705N/AMYIAVDAIANEDDPKLSYLMFPYDEDFLDAIEENLKEIRVENEITFSLDDVLLIRGEFHYVRKKVTMTDISEHRYCIGRNTEKIPQLQNSKLHVANDYFYFSGYRKATKNDKTSLKFVSENFNLVTIENLRKYVKSKKAMVE*
Ga0114354_10637684F077288N/AMEPTVWIYFSKTGTGYELQGTDIISGFDAFINTDGTYLIEYSFSDMK
Ga0114354_10637688F093349N/AMSIFQALPLMAQVKVSAHNKNHSLENFTVLSQVKFSSKCKICNKTVTVDLEAELPVSGEVLFDICQKPEKKKKVQISS*
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