NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114355_1004683

Scaffold Ga0114355_1004683


Overview

Basic Information
Taxon OID3300008120 Open in IMG/M
Scaffold IDGa0114355_1004683 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8222
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F013888Metagenome / Metatranscriptome267Y
F072321Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0114355_100468310F072321GGAMKLAELVKTKANRVLGIDASTNSVAFCLMENDKPLKWGKIEFSGADIFEKIYDAKVKTHAMLNELKSDYIAVEGAVLVRSPDAVIKLSYVYGVVIAELMSTGASVITISPTSWQAYIGNKNPTKMEKDKLRFENPGYADSWYKNKMRQIRKQRTVDYFNSKYSLQLDDFDVADAFGIAHYSNTVLTER*
Ga0114355_100468313F013888GGAMHTIGVLPASGKASRIGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVATRPEWVPIVQNMDMNIKLIVREPSTMSDAIKFMIGDYNDTVVVGMPDTYILNAPVNIYKEMMKEDKADLVLGVWECVEELKGRVGQVKVSDGRVIASEDKVDNCDYPDMWGTMLFRKNMIRYLDPKLDHPGKQLKEWISESTNIRAVRPGGRYMDIGTLRGLRNLYKEMDNA*
Ga0114355_100468315F000369N/AMEIELADHYDRMNKVVGELLKGNSPTQIAALTGFKRAEVIEYIDEWKEVVRSDSGARERAKEAISGADQHYAMLIKEAWKTVEDADTQGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAELATQLAETERKQDILVKILKEVTATCPKCKLEVAKRLSQITGIVEPVVIDAEQVSGS*
Ga0114355_100468317F000376AGAAGGMSIYQDKAKECKCCGKHVPLPTVLKEYNGVMLCPTTFSNVIEYKRLWKNAGNRPPGNIRKHFSDYVQQIVETTIDKNEDGSLQ*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.