Scaffold Ga0114355_1008225

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114355_1008225

Scaffold Ga0114355_1008225

Overview

Basic Information
Taxon OID	3300008120 Open in IMG/M
Scaffold ID	Ga0114355_1008225 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6033
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (21.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	5.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058094	Metagenome / Metatranscriptome	135	Y
F082584	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_10082253	F058094	N/A	MSQVFFNPLSGAAQNIALPQLDSAGQISGSMIPDDFDDVQRFPTLADFPAEGVVARIYFSADNNVPHRWDVETLSYIPIVADSDGGEF*
Ga0114355_10082255	F082584	N/A	MATVIKLLRSTVPGRVPTAAQVAQGSLAINLADRRLFSKDHNNEVFRIARPRDPSDYQLLHAADGNHLYLGRLAWTDYPASGPAEDAAEWTIYRITTDSAGNVTAEQSAVGAWSNKQNLTFA*

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