NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114355_1030883

Scaffold Ga0114355_1030883


Overview

Basic Information
Taxon OID3300008120 Open in IMG/M
Scaffold IDGa0114355_1030883 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2668
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008943Metagenome / Metatranscriptome325Y
F010764Metagenome / Metatranscriptome299Y
F014121Metagenome / Metatranscriptome265Y
F018913Metagenome / Metatranscriptome232Y
F101046Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0114355_103088311F008943GGAGGMKFDGFDWAIFCLFFGIIVAAGVITYDAQQQRVLFQQTYNKNLECRQALKDQTVVRVNEICGEVPVIGDFVK*
Ga0114355_103088312F010764GGAGMIEIKKSYVLELTEQQAKELYWILKDVGLDVDNELKLVYHELKKLFDSGIR*
Ga0114355_10308832F101046N/AMDFTDYGISLEPEELREIITGKMGFRKCPDCQGDGESWTLHYVLADDLDQSNEQFKDVSAQFAADFDEDNLPPQYSFGECHLYKCDTCKGVGYVPIGGYGL*
Ga0114355_10308833F018913GGAGGMTTNKEKAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSGTNKIDFTDELDVMFNAGWDECLKEIDGICDELLEL*
Ga0114355_10308834F014121N/AMTNTAYQIWETFKAELIVEPTDDMKQALASSIRVISSIIYRDGVLANEPWLTHTAQELNEIAGDVEAL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.