Scaffold Ga0114355_1046904

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114355_1046904

Scaffold Ga0114355_1046904

Overview

Basic Information
Taxon OID	3300008120 Open in IMG/M
Scaffold ID	Ga0114355_1046904 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2403
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	5.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_10469041	F000450	AGGCGG	MGDRANFVFVDGAGDTICLYGHWAGHNMLGRLADAVIAARPRWHDESYATRIAISQLVGDQWNMETGWGLQVNSIGDNEHKIAVINWQEQTFSLHESDDHRNRENKVLGMKNEAIFTMDLTAFCEKYALEKMLT*
Ga0114355_10469043	F000311	GGA	MYIELTAPDRLSMEMAYWDAQIIGLDPTAMSPLTFSIGTGNIEKVSRIRDKHNLVESYVADYEPTGYRW*

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