Scaffold Ga0114355

Basic Information
Taxon OID	3300008120 Open in IMG/M
Scaffold ID	Ga0114355_1066899 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2519
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2519

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F005054	Metagenome / Metatranscriptome	413	Y
F016967	Metagenome / Metatranscriptome	243	Y
F033712	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_10668991	F000258	N/A	MLELRKYLWKELYTREIFNEEDYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKIGLSYEDNWLICCEQIMFTLYSTSVAEINEIRNYMTDEFRRMDESARDINKWTGLSNKFKFHSIWVADISPTAPSEELQGFFSAEVILEVKYSRITDEVGRFL*
Ga0114355_10668992	F016967	GGAG	LDNSGLLVQAASGLERMMYANQNGPLKDSTVAQISAFVYYEAAVISKLTTNAQFKALFTKTMFDQINTDFGNYIDALARSKPKSLHHVYEWKRAGNKTARLFKLNKISEDGLSFRINYEFLPSRSMVPAPSGRRRHMFVNKASVMEEGKPLVIRPKNAEIIN*
Ga0114355_10668993	F033712	GAG	MNSIVDSVLSMNLDVYRQSEIQDPNTGAIIREWNYYKTVPCHVKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTAEKLTAREKVTNIRDSEGNTIWNEINYPNETPTVFEVNRPIWPCNCI*
Ga0114355_10668994	F005054	N/A	MAEILINSQSPITHKVFWNGDVASADALPTVGVYDVTNDPTISPAISPTTLLTTLTSSLDENNPGTYSVNIPYQYADRNKTLRLKWNYTVGGTVVKKEDEVYVITPYVDFNHAQDMGFSTDSSDPGYKSYKELLASEKYARKQIEQYTGQKFYLYDDVYMVYGYDSDILPLPARIAELYYLYSNDILLLDNIEEINNWNYNVILSESGYGIRINRASMLDNTVYTANGMVPPSIHDYSGVFQSGVPYKVYGRFGWEKVPDNVELAAIELMKDYFSKDTMWRNKYVKNISTFDWDFEYTGDAYTGTGNAYADNLLADYVLTTKVEII*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114355_1066899

Overview

Ecosystem & Geography

Associated Families

Sequences