NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114355_1094748

Scaffold Ga0114355_1094748


Overview

Basic Information
Taxon OID3300008120 Open in IMG/M
Scaffold IDGa0114355_1094748 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1190
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016959Metagenome / Metatranscriptome243N
F045698Metagenome / Metatranscriptome152N
F079785Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0114355_10947481F079785N/AMKYRIWSKNAECYTHEPEYPGSSLHCASNYYLDPNGNIVDFVTSIGTNQDDASKCDVDQEAYKIELCTGFKATNGEYLYEGDIIELPL
Ga0114355_10947483F045698N/AMNLPEKQLDVIDLTKLIREVHYKLQLDYQALMGKTTALEAENAELKTKLAAVADKLQLL*
Ga0114355_10947485F016959N/AMNKPQWPTLEGRLNQPLTDELTALQQLKHVLPLSKQAQELYDKLSKESIQETRSDAGTTRNEGGISKNV*
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