Scaffold Ga0100219_103013

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0100219_103013

Scaffold Ga0100219_103013

Overview

Basic Information
Taxon OID	3300008157 Open in IMG/M
Scaffold ID	Ga0100219_103013 Open in IMG/M
Source Dataset Name	Minidiscus trioculatus alone and Minidiscus trioculatus with Planctomycetes bacterium Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7152
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location Name	USA: Monterey Bay
Coordinates	Lat. (^o)	36.746	Long. (^o)	-122.026	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094948	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100219_10301310	F094948	N/A	AWVLDCHYNIVHCLSSPQTITTGVGVAKYWADLDFLAQSEARLRPTHGCKSTAGTSTKVLQVFMNLLDT*

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