NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114019_1027239

Scaffold Ga0114019_1027239


Overview

Basic Information
Taxon OID3300008159 Open in IMG/M
Scaffold IDGa0114019_1027239 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 160178356 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1206
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070224Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0114019_10272391F070224GAGMKRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIIGFGDSLILENRLVYYAAGYPEMKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRFSGEVDRWQHPHLFVIEHDKKASRYYKYRIALVIYMDYNHPEAHIVH*
Ga0114019_10272392F070224N/AIYIIRSGIYIPPVSGEPIYLLASPLKSGHTPGNKLRTRDWVKVDYSDQNNIIIINVGDPLVIENFFAYYAAGFPKMKEYKLYHKGTGEEITKEDFDSIKFSRMPMALREIKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKADRYYKYRIALVIYMDYDHPEAHMIH*
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