Basic Information | |
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Taxon OID | 3300008216 Open in IMG/M |
Scaffold ID | Ga0114898_1060117 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1193 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 38.55 | Long. (o) | 13.18 | Alt. (m) | Depth (m) | 3511 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002078 | Metagenome / Metatranscriptome | 596 | Y |
F034953 | Metagenome / Metatranscriptome | 173 | N |
F046426 | Metagenome / Metatranscriptome | 151 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114898_10601172 | F034953 | AGG | VKQTQLILLIKKYKPDTPVIVTWKDAVDTYDEVTLNKLILKEVLYDTIGFFLTVKDDYVVLAYNKENDKETYKGTAMIPCSLITDIRRLTDGYGNVSENGNYPITVKGDL* |
Ga0114898_10601173 | F002078 | AGGA | MEMFMNQAWFQIAGEIVLMFTVITGALPDRWVQKVPVLGTVWPIFNWLAGNIFNNINHPKGMAAKAEVEKEIDEAKAKVRDRVGMPDVLDGM* |
Ga0114898_10601174 | F046426 | GGA | LVCLTFWTGCSILPELVAPAANFAIGFYDHDDYYSKECLWYDEVKLNEKTKKWLMESNPPEVVSKDLAVVSRNNDIYKEVCEREKSMLDKVEDKVRRLTDE* |
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