NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114899_1025982

Scaffold Ga0114899_1025982


Overview

Basic Information
Taxon OID3300008217 Open in IMG/M
Scaffold IDGa0114899_1025982 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2220
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.09Long. (o)11.46Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066859Metagenome / Metatranscriptome126N
F078831Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0114899_10259821F078831N/ASIYGKHRAFTSSQQNLVIPGAKSKYLENLSITINGLQNGSTATTIANALGLVNPLEIDVGGIPQIRARLSDIYAMDMLWLQHNPLTKISAGDNQEWIVNSLIYPCWFPPSRAEATTTATYAAVTNADNTEISITAEYLDGIPRNEALYYNEFSKNTDGVDSSSFGNWTQTTNLVGNLTGCLFNSPTIPGGSTLMEDGTIQQVRVQGNGNTLLVYEWAEIQNPGIFNGQMFNSLEESPATTGILDNYRWLSLAKEPIPAGTRVQMDVMAGVDSSTIRTLQVQQVPFRGR*
Ga0114899_10259822F066859AGGMVHDLPDENGRVDTRINTSRAGYFISNFDVSNDVTVTPQGGGTIPITLVPGSKISISDKIGLVSEGSNNTRNYIFLSWKAGYAA*
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