Scaffold Ga0114899_1071713

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114899_1071713

Scaffold Ga0114899_1071713

Overview

Basic Information
Taxon OID	3300008217 Open in IMG/M
Scaffold ID	Ga0114899_1071713 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1199
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.09	Long. (^o)	11.46	Alt. (m)		Depth (m)	1200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014552	Metagenome	262	Y
F016735	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10717131	F014552	GGA	MRGLEKGQECEVKFLTDPKPVETEHGSKFDIQVLLLSHPHESYSSLKKEGKRLVWRTNCHVVRVTITDLFVNNDEEFVKDWYANTWTISCKEDGNIWIES*
Ga0114899_10717132	F016735	N/A	ALVWLLSFGLYLGIYTYWIPLRTQKKIETWLMSEESDETLLASLGVITHKIREQALVDFEEFMLPQARDSFKNFWNGAMGNAAQELSKTEEGSQLSIMHSMASELKDQPWYVQAAASKLLPLINKAAESQGDTVQTPLKGLGLHK*

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