Scaffold Ga0114899_1178488

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114899_1178488

Scaffold Ga0114899_1178488

Overview

Basic Information
Taxon OID	3300008217 Open in IMG/M
Scaffold ID	Ga0114899_1178488 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	681
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.09	Long. (^o)	11.46	Alt. (m)		Depth (m)	1200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024648	Metagenome	205	Y
F062171	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_11784881	F024648	GAGG	MCEYHLYPGDMFRTKAGLGLIVEKSGGYFHYSNVGDDQRKGYPKIETKRFYGYCDDMSHGEVLEVILVPNRKYRRKRK
Ga0114899_11784882	F062171	AGGA	MKPGDLILYGTKPHWELPGVLGILLRKLQYETDDDEAQNWDGEPAWWIQFINDEGPMWTYETDLFLVSRGN*

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