Scaffold Ga0114904_1032761

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114904_1032761

Scaffold Ga0114904_1032761

Overview

Basic Information
Taxon OID	3300008218 Open in IMG/M
Scaffold ID	Ga0114904_1032761 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1436
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	5.24	Alt. (m)		Depth (m)	2820
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019555	Metagenome / Metatranscriptome	229	Y
F021181	Metagenome / Metatranscriptome	220	Y
F068133	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114904_10327613	F019555	AGTAGG	MYHQPFTGSIQLEHITWWKRYWIRPILLEILYPKKGWITLVKVFREGKPSIRVITKLASSGKRELSITKQLYGEEVIHEQKRKKKLEQFRSKQKNMQTIDITQSVE*
Ga0114904_10327614	F068133	GGAG	MQLAIDVFIDMFKSKEIYIIIGSCIIMWIILEWNDV*
Ga0114904_10327616	F021181	AGGA	MRALILISLLAGFVLAFLGVIIMFHSGEVWLGLGISLVGFYAVIRATQRDTI*

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