NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114910_1011292

Scaffold Ga0114910_1011292


Overview

Basic Information
Taxon OID3300008220 Open in IMG/M
Scaffold IDGa0114910_1011292 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3327
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.02Long. (o)8.37Alt. (m)Depth (m)2641
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042083Metagenome159Y
F077162Metagenome117N
F105881Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0114910_10112921F105881AGGMTDETFALVWVLSFGLYLLIYTYWIPLKTQKKIESWLMSEESDETLLASLTVITNQIREQALVDFEEFMIPQGRKAAIDFWNGAMGNAAKKLGDTEEGSQLSL
Ga0114910_10112925F042083AGGAGMARRRMAIPHPSITGMAAGLSVANYLNQGTAVGAGATLTKGVIKSTLDGNLNAAFADLSKNAVDLAMSKGGKAVLSSAIVLATAGGLARKWFPSVKLGGNKLYFKI*
Ga0114910_10112928F077162N/APWYVQAAASKLIPVIQKAATEKPKEKVTKLVHGKFGFE*

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