NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114910_1060078

Scaffold Ga0114910_1060078


Overview

Basic Information
Taxon OID3300008220 Open in IMG/M
Scaffold IDGa0114910_1060078 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1196
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.02Long. (o)8.37Alt. (m)Depth (m)2641
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022109Metagenome216Y
F071753Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0114910_10600782F071753GGAGMQTVLSKEIVGYGSYNSYVNKKGHPTNIQFNFERILSKNRTLHPYGWDTDTPIWNIKYTEDGYNYEYIGCVTAFPLDGVNASMKWNDEDYTISSDDPYKAFVEIVNLVTATYTEEENQAFYQQYGY*
Ga0114910_10600783F022109AGGAGMRYLEVESIWDKHGDCILDRRSEHQELTFKVNHNRGTSKCYLFEDQAEDIIHILSVSPCISSHYSKADYAEKERLSKTLPLNHGDVVRIKKRGSKEYTIHVNGSYSDLGYLVPIKD*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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