Scaffold Ga0114916_1012839

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114916_1012839

Scaffold Ga0114916_1012839

Overview

Basic Information
Taxon OID	3300008221 Open in IMG/M
Scaffold ID	Ga0114916_1012839 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3157
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	West Anvers Island
Coordinates	Lat. (^o)	-64.45	Long. (^o)	-64.88	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028624	Metagenome	191	N
F030152	Metagenome	186	Y
F051967	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114916_10128396	F030152	AGGAG	MTITKAAIQALATQSVKDQYARETDKAIYLESVIDAGGFDISLTDRPDQWDRCIEWLENATA*
Ga0114916_10128397	F051967	AGGAG	MLPRTAQAHTPLRASKSLRTWCGPYAVAVFLRQHYDAAYDACLQFTYRGKITGMSNSLMKVVMGANNVEMTFHYKREIGSYARDNATLATWLKTRDRKKTYLVNITGHYIVVSGDKTIDNQSGEWHSVRKSKHRRKRVAYAWEIKATH*
Ga0114916_10128399	F028624	AGGAG	MIPCTECDHTDYHGKVEKEVHQRFGGTLEPVGEWINCDYCDGSGEVEDEDDER*

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