NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114916_1017934

Scaffold Ga0114916_1017934


Overview

Basic Information
Taxon OID3300008221 Open in IMG/M
Scaffold IDGa0114916_1017934 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2490
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest Anvers Island
CoordinatesLat. (o)-64.45Long. (o)-64.88Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011113Metagenome / Metatranscriptome295Y
F022980Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0114916_10179341F011113AGCAGGMSAEKLKFKLELYATMWDRPPVAEILMNDKSYFKGDITTTEDK
Ga0114916_10179344F022980N/AMFLTEVRRHNDQELYDWAGSMLADLKDEGKIFSAHYLGYGQFTLDRNEKLISYTNTTIVFCFDYLLEDTRKHILEEIENNKDARLIWIGAEKDPYDHPRITNIFWPADLLLQNKEYQKFDDVEKEPSNETHWISTSLGIRPHRIYMASLLKGMDLDKHGDLRIKTVSSSGKKSSLVSEELAKGNGNAPDNTPTLPLYVKDKWKLSKEIENISEESSKGYQELIKRKWWGSSLFLYSHYLALGWNENNNALNFDKNLRHLYKDKTLEVVNETMHGYNPIFVTEKFINAVIGLNLIIMNGPAGTVKLLEDLGWNSCRHVVNHDYDDITDPILRCEQAIRLNSKLFSDTAYCNKSWQDNLNILHDNSKWARDHLYNQILKNCEQQFKEVA*
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