NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114916_1071821

Scaffold Ga0114916_1071821


Overview

Basic Information
Taxon OID3300008221 Open in IMG/M
Scaffold IDGa0114916_1071821 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest Anvers Island
CoordinatesLat. (o)-64.45Long. (o)-64.88Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019910Metagenome227Y
F059361Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0114916_10718212F059361AGGAGMIDDAITTVGFALQAHANTCYHEDTEENRAEREELAIAWLTIKSHLNMSDDMPKENLQPQRGH*
Ga0114916_10718213F019910AGGMTMSRDVNTIPTTDRHIVSYTIQVEWSDTPKSVLLEHDMPNHVANALDEWFGEIETEENAR*
Ga0114916_10718215F019910N/ADVNTIPTTDRHIVSYTIQVEWSDTPKSVLLEHDMPNHVANALDEWFGEIETEENAR*
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