NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114916_1108491

Scaffold Ga0114916_1108491


Overview

Basic Information
Taxon OID3300008221 Open in IMG/M
Scaffold IDGa0114916_1108491 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)663
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest Anvers Island
CoordinatesLat. (o)-64.45Long. (o)-64.88Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082788Metagenome113N
F092715Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0114916_11084911F082788N/ADMLNYVIKELSNQILYDGHKGSYSNDVAEKIIADYVIETNLVSKEFFHDHWAEDKTKTLLNLLNDLYKRYENE*
Ga0114916_11084912F092715N/AMKTNKDITQQQILSLAYRELDKLLPLDDYWESDEHYNISNLIYDWCLGNRVITQDWLDDTLKHLDDERLMELLPILFKKYRKCIARRITEELMNT*

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