NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114840_1002780

Scaffold Ga0114840_1002780


Overview

Basic Information
Taxon OID3300008258 Open in IMG/M
Scaffold IDGa0114840_1002780 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3122
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)7.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015961Metagenome250Y
F019601Metagenome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0114840_10027802F015961N/AMDEGLTLKMCTSILKGTIKEAIALNKKMNITSVCREVDVFFIGLATNMPSNKNVELGGRDGFKFFKHGVSSYMLPKVRRINGGWWISIARQLKIFLCVTRIISDATRSKFCDALSLLFEVHHGLRNPVDKTDLDSYQGKINFLLTTLVDITLPWSKSQCQSIKFHWPRHWGHTRQV*
Ga0114840_10027803F019601N/AVYLNIDTREGLPRWISEAANRTIFRSITNAIATNILQWTPPVLVATQLKINLGTLHEVHHVILRAMPRYQGIVAHDCVKVWLDEENDEGVTRKSVYFGKCMVFFEDSEGKQFVVIQWFTRHEKNGFNKITNVPSFKLAPETNTKSYSTLPLAAIINGALMVPGRGRFWALLAPKEQRKYVAFFPNPNPNPNPNPNK*
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