NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114840_1007330

Scaffold Ga0114840_1007330


Overview

Basic Information
Taxon OID3300008258 Open in IMG/M
Scaffold IDGa0114840_1007330 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3787
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)7.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009073Metagenome / Metatranscriptome323Y
F017827Metagenome / Metatranscriptome238Y
F021984Metagenome / Metatranscriptome216Y
F030087Metagenome186N
F090374Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0114840_10073301F017827N/AMSYASMNYEKFGMYKNTPANKERVIKAGTPVVTYTTMFGKTYNLPYRTKKQYAEIVQFIKLFRNEDITLKRILSDYSVKMGRYVNESKLRKEIKAEFGFTKSAIDLILSIH*
Ga0114840_100733012F090374N/AMSSTHIVAEAYNDIDKIHSIERERENTMADPKYIQWVKELKVSQLYTSRELIHNANRLMKQYTHKIGLEG*
Ga0114840_10073302F009073N/AMKNYQIILTSILSFAVAYFILNGTAAEYVPFAGPENELGCAVIALTMGVLSTYAIDWKSFIQFLNK*
Ga0114840_10073303F030087GAGMSSETRREVLDIIMEIGYGENTFMLTNSMYGLFDGYLYDELIQYADEVTMSKELYRRILKVFNTVCKYPKYARYDEPTESYNEPEPIEYVEGMGVADGKLYLATN*
Ga0114840_10073306F021984N/AMNTIPRGYTITPKVKYLRTKDGKKRTQLVELTHKRKGIKKLFGNEEYALKYITKLETEKVTSNALAGKGAPTLGKSAILSAGKDLIASKELAGEFDEPLNENE*
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