NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114840_1012409

Scaffold Ga0114840_1012409


Overview

Basic Information
Taxon OID3300008258 Open in IMG/M
Scaffold IDGa0114840_1012409 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1455
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)7.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001900Metagenome / Metatranscriptome620Y
F028174Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0114840_10124091F028174N/ADQQIQVRTVDRLTSREKITNIRDQHDVPIWTEINFPTETPTVFEVVGVTPITDPFGRTIGYNSAMRRSENQQIGQ*
Ga0114840_10124092F001900GGAMLVQAASGLERLMAGTKGDLMKDSTVAQISAYVYYNAQVISKLTTNKDFQSKFSKTIFTQIDKDFGEYIDSLARSRPKSLHHVYEWGRSGDKTARLFDLNLGSQDGLSFKVSYSFKPSTSFVPASSKFRRRHVFTNKASIMEEGKSLVISPKHSERLVFEADGQTVFMPIGKSVSVKRPGGTASRNQFTLAHGRFFSGQLVNSSIKKSGFQQLFNISMAKALKLPVSIKKVQYSFSPNTIRGQADASLAAAFGGVL*
Ga0114840_10124093F000258GGAGGMTANYKLDAMIELRKFLWNELKTKNIFDDEDYWSDNLDENIIPIVPVQQTAEMNQFLSGKKHLVYDKIGMSYEDNWAICCEQILFTIYSTDFSEINEIRNFMTDLFRRMDESARDVNYWSGLSDKFKFHSIFIADISPTTPSEELQGFFAAD
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