 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008261 Open in IMG/M |
| Scaffold ID | Ga0114336_1021146 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3788 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.236 | Alt. (m) | Depth (m) | 5.7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F001229 | Metagenome / Metatranscriptome | 741 | Y |
| F001900 | Metagenome / Metatranscriptome | 620 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114336_10211464 | F001229 | N/A | MNLDVYRQYEVQDPDTGAIVKEWNYSRTLACHAKGIISNTATTGSGNRQTFSNKYVDDQVLQVRTSEKLTAREKITNIRDSDNNVIWQEINYPTDSPTVFEVMGTTPMTDPFGRVIAYSSSLKRSENQQLGQ* |
| Ga0114336_10211465 | F001900 | GGA | MLIQAASGLERMMHSNQNGPLKDSTVAQISAYVYYEAAVISKLTSNKSFQNAFGKVIFDQINLDFGNYIDALARSKPKSLHHVYEWKKSGNKNARLFKLNKTAQIGLSFGIDYTFLPSKSMVPAEKGRRRHVFANKASIVEQGKPLVIRPKNAERLVFQIDDETVFMPKGASVTVKRPGGSAATNQFTLAHSRFFSGNLVNDSIKRSGFQKLFNSSITKALKTPSNIKKVQYSFSSNTIRSQADQALTLSFGGAM* |
| Ga0114336_10211466 | F000258 | GGAGG | VTANYKLDAMLELRKYLWEELSTREIFDKDDYWSDNLNENIVPIIPVQQAPELNQFMSGKKHIVYDKIGMSYEDNWLICCEQILFTVYSTSVADINEIRNYMTDEFRRMDESARDINRWAGLSDKFKFHSIHIADISPTAPSEELQGFFSSEIILEIKYSRDTDTNGASSTLGRFL* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |