NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114336_1021623

Scaffold Ga0114336_1021623


Overview

Basic Information
Taxon OID3300008261 Open in IMG/M
Scaffold IDGa0114336_1021623 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8043
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005293Metagenome / Metatranscriptome405Y
F010317Metagenome / Metatranscriptome305Y
F019468Metagenome / Metatranscriptome229N
F053239Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0114336_102162310F053239GAGMKYKMFVLLEGKKNLIASTNNFSDFENLMTEFEKFEIQWEVTENGDTVFSTFASVLN*
Ga0114336_10216233F010317AGTAGGMKKIYIEKLSEVSGGLPARSMEDHIMGKPNDNYSSIPVEYNLEGVLSYDIEVGKSVVVGRTKRNGVEAYGVFSTSRVTEVGNNYFKTMNSVYLYKYLSL*
Ga0114336_10216234F019468N/AMTIEKTYKLSIKDTAYFLTEEEVTKLYEQCRKALNIDNTYFPNYPPGVRKFDDDKTTPLNPTTPSIPYPYDTYPWYTPKYPNDTGTPYWTGPTTTCGTINAGEGNCVMDTNWQPNLCNNVKSSTGINFLSDDDNNKWCSSVAEAISKLTAKKDNTTTTSEGIKVG*
Ga0114336_10216236F005293N/AMVNDSVPFVPTRDDLIGYISDTHKTIHGFRPRPVWSELTYEQLDKWGRELAAEVVIYRKQEVVRNRIARGLRRAQQRAWVEKKRSYFTGSTFTIGNVVNF*
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