NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114337_1064494

Scaffold Ga0114337_1064494


Overview

Basic Information
Taxon OID3300008262 Open in IMG/M
Scaffold IDGa0114337_1064494 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1841
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001781Metagenome / Metatranscriptome635Y
F021535Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0114337_10644941F001781GGAGMKPDDKDKLNECLKILDSTDLGLSLVWLWTWSTINNIMEDETYKVKVTQDQMWDHLCEAVEAGQGFSLEYGAEQHQDDVLEWMLNRDYIVDTMFE
Ga0114337_10644944F000263AGGMRHTELPVHLQRMVDAEVTGLDIMHGELKNLMLLGEKELERTLIVEQESGEAMDSMERTYAEGYLDALVSLYKLTYDLSFALSDKERRDSGEINERGQE*
Ga0114337_10644948F021535N/APTLLFTLSYEEETGWGGECEILRGVVISESEYDNMCRDCDATDQMEYCEENDCGEICGNCHWLGEADLEAVAKCQTHSIYLETKVPEYRKVEA*
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