NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114349_1043690

Scaffold Ga0114349_1043690


Overview

Basic Information
Taxon OID3300008263 Open in IMG/M
Scaffold IDGa0114349_1043690 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2192
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F031384Metagenome / Metatranscriptome182Y
F047643Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0114349_10436901F031384AGGAMPNWVFNGLTIEGNPELVNDLVKQMNKPFVMLHDSWNATTGNMEVTQTTYPNPVFAFYNIYNHRQAGITDKDYLAQPPRDMPIEEQM
Ga0114349_10436902F000450GAGGVGDRANFGFVQPNGNTIVLYGHWAGYHMLANLAEAVAKAQPRWSDPSYATRIAISNLIGDGWSMETGWGLHVNEIGDNEHKIAIVDFTQMTFSLHEEDSFYNLDNKVRGMKNDALFTMDLRAFVEKYTDAPILV*
Ga0114349_10436905F047643AGGAMYYQLQAPTGAACKAAYWEAEFSGLDPYYISDNVFDLGTGSIEKVSALISKYKLDILVESDYEPTGYRR*
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