NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114353_1038735

Scaffold Ga0114353_1038735


Overview

Basic Information
Taxon OID3300008264 Open in IMG/M
Scaffold IDGa0114353_1038735 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-53-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3368
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F002207Metagenome / Metatranscriptome583Y
F003422Metagenome / Metatranscriptome487Y

Sequences

Protein IDFamilyRBSSequence
Ga0114353_10387351F002207AGGAMPNWCYNTLTIQGPKSEVDYIKDRLNAPFTLAQETYGMGDISSSGFPTKIKLVEYNNPVFAFHNIHSYKDDGITDEEYACQPSRGGIDTNDPDWFRKSVEFAKTQKDWYSWNNSNWGTKWDVAVRDDEEYSNTELLEYKSEGDDNWLVYKYETAWSPAITILTKLSNLVPNSLLTLEYE
Ga0114353_10387352F000450GGCGGMGDRANFGFVQPNGNTIVLYGHWAGHQMLARLAEAVFKARPRWNDPSYATRITISQMVADDWNSETGWGLHVNEIGDNEHKIAIVDFNQQTFSLHEEAPRNDLDNKVNGMSNEALFTMDLSNFY*
Ga0114353_10387356F003422AGGMSNELISSKYTFACDPDECDCLIELTSSDGFGFPSGVMEITCPCGRKPTLLSVEHATIQPTETKGNTMEETTTIGSDAFHSPAVEYNPNLLVTYKVLHGYSDPEYTTSKVTSLEWDLHNGRQSQKTVSLLQSKINTVKDIILEAYEMSDDQETLQSIAEALGIELTRDIQFTATIEVSGTVTLNLLEDYDLESEITDSLYVDANNGNIQIDDQEVCHVREA*
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