NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114361_1000672

Scaffold Ga0114361_1000672


Overview

Basic Information
Taxon OID3300008265 Open in IMG/M
Scaffold IDGa0114361_1000672 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9742
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005733Metagenome / Metatranscriptome391Y
F024000Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0114361_10006722F005733GGAMVEAHRPMEHISGFMRSHYMLPSGVCSRRIGPADAMVIAVAVV*
Ga0114361_10006728F024000GGAGVKVAVLADSPGAEEYLKHINNFIRMLERKKIEEDLLKFAKAVLSPKALVRKLKTAPQGEKPAEKTFWLGHLEAATKKLAEAEVCADAKVETVCGLFPKTLKEDPKLQWDRIVKDMHSKDPWEDLRGIKHGGIRRRSSKSLWECIDFHKRMVYSIDAAEQQRLYILCHLKKPARSSIQAHMTRMETLNKYLEQLPTIKNSPQAVLSTEFGNVPFNKSTLASIILNHIPVAWRNQYNVTHPIVPKSPRAILLDLKNLEKVFVKKSNEAARANKAKVAAAAELAEHVPRKGKRAHGGGSEKGTPKKGRTDKFCKWRKAVDGPFMTHNTTECRRFNKDGSQKDRPTKPFDSARKPWKKPGSGDSAQMAYLKKR*
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