Scaffold Ga0114363

Basic Information
Taxon OID	3300008266 Open in IMG/M
Scaffold ID	Ga0114363_1001333 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25492
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (86.05%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

25492

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (86.05%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F039525	Metagenome	163	Y
F042295	Metagenome	158	Y
F056420	Metagenome	137	Y
F068451	Metagenome	124	N
F072298	Metagenome	121	Y
F082375	Metagenome	113	N
F086588	Metagenome	110	Y
F090290	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100133315	F090290	AGGAG	MDKQLPYTTKSGLQIGCRYTPPKRNDMSHDAELLQMALLNIEPEFSQRRIATWVAYALFLVALYTALVVWEV*
Ga0114363_100133318	F042295	AGGA	MSYASAKQRYAEKTTDTFDGPESHDCFANGCPMAGGISTGGKWVCAYHHQATSDMWPRVTEALRDAESIRVAINEVMKIDMISWGAMVNGYPPKWQEFAALFDDQPELQPTEHEKIRKTKYEYRLRNELAIRAGLAKRKV*
Ga0114363_100133326	F000166	AGG	MPNIPTSEHAELFAQSVKNWQQVLNLGDWRIEKGLKPAKQAMASVEFNDGARLAIYRLGDFGAEKITPESLDKTALHELLHVFLHDLMTVAQDPKSSEDDLEKEEHRIINLLERLLSSKDSHGIK*
Ga0114363_100133327	F072298	N/A	MRPIVKAALAIPEMQFAFECICADDSRKFGKEITPDFYCDEVIVSEAEYRLSTYFEDGHINDDMRLGEEGAEGKKIAQKDVRMLKAFIKKYKTMDSMWSKYTNHLIK*
Ga0114363_100133328	F068451	AGGA	MTTTTALKIVDQLGLIEDQIAALQEQADDLKNQLKMLGQGSYAGTMYVTTIKHTPEKKTTAWSAVAKELNAPADLIAKHTKVTYNILAAETKALSN*
Ga0114363_100133331	F056420	GAGG	MTTLFKLEEHLMMLLVEDKICFEEGDWDHLAKIRMAIDDTRDQIESFKKVTA*
Ga0114363_100133332	F039525	AGG	MSETNMSPYIKGFNAGVDCVLTEIERLEKTGALSLDQLLKHLDPQRDQKMAQTPDKGAL*
Ga0114363_100133335	F086588	GAG	MIKYEGYDEAIIGPAMIWRDRQQVQVLVYDAEKIREILMRDGITAEEAREYIEFNIEGGYLGITTPVLAWSQDFWDEE*
Ga0114363_10013335	F082375	GAG	MTPKQFINELFGEDWKSSQLPVFLDQIKVWAEDAQRYYVVRDFAKTQFNENPRDRKDCHEFDDLVDAKRFEQELDE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114363_1001333

Overview

Ecosystem & Geography

Associated Families

Sequences