NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114363_1002045

Scaffold Ga0114363_1002045


Overview

Basic Information
Taxon OID3300008266 Open in IMG/M
Scaffold IDGa0114363_1002045 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11563
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F008808Metagenome327Y
F009064Metagenome / Metatranscriptome323Y
F018684Metagenome / Metatranscriptome233Y
F050167Metagenome / Metatranscriptome145N
F052382Metagenome142N
F057118Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0114363_100204511F057118AGGMNTNNYKISINVRAELVYYVSEYDIDRAIELAIDAPYKEWEVSYFDMPTGADVNAEEI*
Ga0114363_100204515F001531GGAMDWDSIERWDYIVTAVASEYHRKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQRWKAKSVGYDIGDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGRPSAPAEGGNLTIMMLEIDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYRDVDTTSEEPEEEHQPPVE*
Ga0114363_100204518F008808AGAAGGMDRSIPPCPECGKRFNNVFEATDHLLEDDDDEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETHPAAMKDIVEEMIIESQMMDIDNEIKHFLGRNSNE*
Ga0114363_100204521F052382N/AMSSYGKRKGATFETGVVKWLRSKDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVIVKRRQAGIDKAWVVEDFEQWTKRAGK*
Ga0114363_100204522F009064GAGMIIQLNKDEVRVCTLLAVERWLAKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNMSWNVPYYPNALHKKRHSLPDVGENVEVRSVRTQDSIPFWAKDKGKVIIGTKCLDTEYYSEVEIFGVAYPEEFIKPEYYDSYINGWRIPISGFTHE*
Ga0114363_100204524F018684N/AMRNIMANEDWKLQVSYKTPSGDMINIRANTADELSVLLEGVGDYSPQIAATQQKIVGSYALNPSSTSSSTTSTKPSKYSAPTPVSVVSGTAAPVCKHGARIWREGISKASGKPYAFWACPSPQGTPDQCKPVN*
Ga0114363_10020458F050167N/AMKGNTMTTTTARVYEDYLASISMTLADLADELATVQLDVESVNGYEPRGTILKALPTQSRFKPKSMWVSLGNGKYQHLTGSKGLIAKHSRLDGYTSVVFRP*
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