Scaffold Ga0114363

Basic Information
Taxon OID	3300008266 Open in IMG/M
Scaffold ID	Ga0114363_1002484 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10297
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (20.00%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

10297

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (20.00%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F009808	Metagenome	312	N
F019647	Metagenome / Metatranscriptome	228	N
F038230	Metagenome	166	N
F045094	Metagenome / Metatranscriptome	153	N
F052594	Metagenome / Metatranscriptome	142	N
F054865	Metagenome / Metatranscriptome	139	N
F090393	Metagenome	108	N
F099306	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10024841	F008078	N/A	LFNHYHNLIQSIGGELGQEILVSILAKHCALFAAREVLKEKWNIEVEGSYDEYYYWEEVEHEIENYEE*
Ga0114363_100248415	F054865	N/A	MQVKTNRFIIKYREGIVSVAAKDVAEAIEKFKELRIETCAKELTIVPEDEMYKRREEIFRKE*
Ga0114363_100248417	F009808	N/A	MLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQTTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRRVVREVTKTNISSTQPIKFTMAVCFILAVGYLPAQNNHFMAYNTMSLEKIDKGLLERRFYSEADESYTIDTITYDMLSGIDLWDGYSRTTYDNCLFMTYGTQNIEYFPLAGIWKYNNKYYDYIGLLKFVSKYVKRNFLNKKINYGKIRRH*
Ga0114363_100248419	F099306	N/A	MIQEKVIRKRLNNLEKIYIAESLKDKNRQNKWFMDIIIQRIKQEKTKLKLLKIGTHGC*
Ga0114363_10024842	F038230	N/A	MKNKQDRNAYMREYMKKYRATMNEYTYKKIRERENLRLRAKYHAMSREQRQKYIEYQRSYHKLKQFTNE*
Ga0114363_100248420	F052594	AGG	MAAKNYGMDKKQIALCEAMVVKYPKGIKTNNVVSSTSTLISFYNSKDERNKQFYQYMNPERMVSLLWQVVKINSEKEDVKEAAVRMLNKLLENIVVK*
Ga0114363_100248424	F001640	N/A	MRYLFLFLPLFSFAQDVVKDTVYIQKQGNIYYIIQQTTLSDSTVTGSKQILGDSATAIQSLVTDAERQSNTIAIHAKPIITKAKSVQRINYYNDLHQQISGKPVYFTTAQRDTAKFIGEWKLNFNGEIIDGVIQLNVNKRLIFNPDNGKVYSIATNLLLSTFTNQISFNFNGIKYDLYKYAEGKFATVDGDVRLIKME*
Ga0114363_10024843	F003786	N/A	MSNLTQYQPRNSDEQAIITARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIATNEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYITYRRKIIASHDNEVAALRHQVQMEERGKAEREKLYAEFPTMIKEFTGKTFDDVPLYWYDMCLKFDMITYEEGEKRALWEEAQAIALKEPPESLDLMTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK*
Ga0114363_10024845	F045094	N/A	MDDYHIKGTTEEDVEKAINKIFRYELLDDAQQVLFNEIMTEALDVPWIAEQLTDVWDRYEQEILDCKKEDYYENR*
Ga0114363_10024846	F019647	AGAAG	MKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVIEDEQQTMPAQTEQSDKPDLAALVFEMSAIYSQAYIDIYNKISEAGVPNESATAATSTIFIQVFHKLR*
Ga0114363_10024847	F090393	GAGG	MRQYLRCLFFKNLKTKQMALDRKTPFNVVFYDHEQEKIQSWALTGSSRLALLVHTIAFQKDKIEANNINKEEIIKSALDYLIHDLKKFLEIPYTTEDNA*
Ga0114363_10024849	F002778	N/A	VKEYNAQMMEIKAFCDEVNAWISTAPSAEHLEECDEYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSDNYRTLLSSFRQERILVGHMTT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114363_1002484

Overview

Ecosystem & Geography

Associated Families

Sequences